Detailed information of SNP:
|
SNP ID:
sf0611635621(Gbrowse)
Chromosome: chr06 Position: 11635621 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 75.83% | 24.17% |
| All Indica | 799 | 90.24% | 9.76% |
| All Japonica | 497 | 54.73% | 45.27% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 43.58% | 56.42% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611635621 | C->G | INTERGENIC | None |