Detailed information of SNP:
|
SNP ID:
sf0611637450(Gbrowse)
Chromosome: chr06 Position: 11637450 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 52.27% | 47.73% |
| All Indica | 794 | 88.92% | 11.08% |
| All Japonica | 496 | 1.81% | 98.19% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 209 | 88.04% | 11.96% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611637450 | C->A | LOC_Os06g20280(LOC_Os06g20280.1) | INTRON |