Detailed information of SNP:
|
SNP ID:
sf0611642368(Gbrowse)
Chromosome: chr06 Position: 11642368 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 51.46% | 48.54% |
| All Indica | 788 | 16.88% | 83.12% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 15.95% | 84.05% |
| Indica II | 208 | 14.90% | 85.10% |
| Indica Intermediate | 210 | 20.48% | 79.52% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611642368 | G->A | INTERGENIC | None |