Detailed information of SNP:
|
SNP ID:
sf0611642384(Gbrowse)
Chromosome: chr06 Position: 11642384 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 72.57% | 27.43% |
| All Indica | 798 | 84.46% | 15.54% |
| All Japonica | 497 | 55.13% | 44.87% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 85.03% | 14.97% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 44.48% | 55.52% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611642384 | C->T | INTERGENIC | None |