Detailed information of SNP:
|
SNP ID:
sf0611645457(Gbrowse)
Chromosome: chr06 Position: 11645457 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 75.60% | 24.40% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 496 | 55.04% | 44.96% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 44.78% | 55.22% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611645457 | A->G | INTERGENIC | None |