Detailed information of SNP:
|
SNP ID:
sf0611648854(Gbrowse)
Chromosome: chr06 Position: 11648854 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 58.48% | 41.52% |
| All Indica | 787 | 28.59% | 71.41% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 369 | 33.88% | 66.12% |
| Indica II | 209 | 19.14% | 80.86% |
| Indica Intermediate | 209 | 28.71% | 71.29% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611648854 | A->T | INTERGENIC | None |