Detailed information of SNP:
|
SNP ID:
sf0611649490(Gbrowse)
Chromosome: chr06 Position: 11649490 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 77.87% | 22.13% |
| All Indica | 799 | 89.61% | 10.39% |
| All Japonica | 497 | 55.94% | 44.06% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 45.07% | 54.93% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611649490 | T->C | INTERGENIC | None |