Detailed information of SNP:
|
SNP ID:
sf0611650820(Gbrowse)
Chromosome: chr06 Position: 11650820 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 59.05% | 40.95% |
| All Indica | 788 | 29.31% | 70.69% |
| All Japonica | 494 | 98.79% | 1.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 35.14% | 64.86% |
| Indica II | 209 | 19.62% | 80.38% |
| Indica Intermediate | 209 | 28.71% | 71.29% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611650820 | A->G | INTERGENIC | None |