Detailed information of SNP:
|
SNP ID:
sf0611653044(Gbrowse)
Chromosome: chr06 Position: 11653044 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 57.56% | 42.44% |
| All Indica | 758 | 25.20% | 74.80% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 343 | 26.82% | 73.18% |
| Indica II | 209 | 18.18% | 81.82% |
| Indica Intermediate | 206 | 29.61% | 70.39% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611653044 | C->A | LOC_Os06g20290(LOC_Os06g20290.1) | Non-Synonymous SNP |