Detailed information of SNP:
|
SNP ID:
sf0611679366(Gbrowse)
Chromosome: chr06 Position: 11679366 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.63% | 49.37% |
| All Indica | 798 | 53.38% | 46.62% |
| All Japonica | 497 | 53.52% | 46.48% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 56.95% | 43.05% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 211 | 38.39% | 61.61% |
| Temperate Japonica | 335 | 63.58% | 36.42% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611679366 | T->A | LOC_Os06g20320(LOC_Os06g20320.1) | INTRON |