Detailed information of SNP:
|
SNP ID:
sf0611681951(Gbrowse)
Chromosome: chr06 Position: 11681951 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 52.72% | 47.28% |
| All Indica | 797 | 48.06% | 51.94% |
| All Japonica | 494 | 62.96% | 37.04% |
| Aus | 66 | 28.79% | 71.21% |
| Indica I | 374 | 44.65% | 55.35% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 333 | 73.27% | 26.73% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 68 | 45.59% | 54.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611681951 | T->A | LOC_Os06g20330(LOC_Os06g20330.1) | INTRON |