Detailed information of SNP:
|
SNP ID:
sf0611734327(Gbrowse)
Chromosome: chr06 Position: 11734327 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 64.10% | 35.90% |
| All Indica | 799 | 51.81% | 48.19% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 66 | 4.55% | 95.45% |
| Indica I | 375 | 55.73% | 44.27% |
| Indica II | 213 | 61.03% | 38.97% |
| Indica Intermediate | 211 | 35.55% | 64.45% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611734327 | A->G | LOC_Os06g20420(LOC_Os06g20420.1) | Non-Synonymous SNP |