Detailed information of SNP:
|
SNP ID:
sf0611743359(Gbrowse)
Chromosome: chr06 Position: 11743359 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 84.10% | 15.90% |
| All Indica | 789 | 72.88% | 27.12% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 370 | 70.00% | 30.00% |
| Indica II | 210 | 87.14% | 12.86% |
| Indica Intermediate | 209 | 63.64% | 36.36% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611743359 | C->A | LOC_Os06g20440(LOC_Os06g20440.1) | INTRON |