Detailed information of SNP:
|
SNP ID:
sf0611778999(Gbrowse)
Chromosome: chr06 Position: 11778999 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 57.89% | 42.11% |
| All Indica | 795 | 89.43% | 10.57% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 210 | 79.52% | 20.48% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611778999 | T->C | INTERGENIC | None |