Detailed information of SNP:
|
SNP ID:
sf0611804179(Gbrowse)
Chromosome: chr06 Position: 11804179 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1182 | 74.70% | 25.30% |
| All Indica | 567 | 49.03% | 50.97% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 260 | 36.92% | 63.08% |
| Indica II | 139 | 74.82% | 25.18% |
| Indica Intermediate | 168 | 46.43% | 53.57% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611804179 | G->A | INTERGENIC | None |