Detailed information of SNP:
|
SNP ID:
sf0611817264(Gbrowse)
Chromosome: chr06 Position: 11817264 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 75.05% | 24.95% |
| All Indica | 790 | 64.81% | 35.19% |
| All Japonica | 490 | 98.98% | 1.02% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 370 | 59.19% | 40.81% |
| Indica II | 212 | 84.91% | 15.09% |
| Indica Intermediate | 208 | 54.33% | 45.67% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611817264 | T->C | INTERGENIC | None |