Detailed information of SNP:
|
SNP ID:
sf0611845747(Gbrowse)
Chromosome: chr06 Position: 11845747 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 59.63% | 40.37% |
| All Indica | 774 | 92.64% | 7.36% |
| All Japonica | 497 | 6.04% | 93.96% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 364 | 95.33% | 4.67% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 201 | 91.04% | 8.96% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611845747 | T->C | LOC_Os06g20580(LOC_Os06g20580.1) | Non-Synonymous SNP |