Detailed information of SNP:
|
SNP ID:
sf0611845757(Gbrowse)
Chromosome: chr06 Position: 11845757 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 57.79% | 42.21% |
| All Indica | 780 | 88.46% | 11.54% |
| All Japonica | 492 | 7.32% | 92.68% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 366 | 89.34% | 10.66% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 202 | 88.12% | 11.88% |
| Temperate Japonica | 331 | 3.93% | 96.07% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 67 | 8.96% | 91.04% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611845757 | T->C | LOC_Os06g20580(LOC_Os06g20580.1) | Synonymous |