Detailed information of SNP:
|
SNP ID:
sf0611851181(Gbrowse)
Chromosome: chr06 Position: 11851181 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 66.17% | 33.83% |
| All Indica | 795 | 99.12% | 0.88% |
| All Japonica | 496 | 9.07% | 90.93% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611851181 | C->A | LOC_Os06g20590(LOC_Os06g20590.1) | Non-Synonymous SNP |