Detailed information of SNP:
|
SNP ID:
sf0611855753(Gbrowse)
Chromosome: chr06 Position: 11855753 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 66.52% | 33.48% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 492 | 11.18% | 88.82% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 331 | 6.04% | 93.96% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611855753 | A->G | LOC_Os06g20600(LOC_Os06g20600.1) | Non-Synonymous SNP |