Detailed information of SNP:
|
SNP ID:
sf0611856511(Gbrowse)
Chromosome: chr06 Position: 11856511 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 59.94% | 40.06% |
| All Indica | 787 | 90.72% | 9.28% |
| All Japonica | 496 | 7.66% | 92.34% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 371 | 89.22% | 10.78% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 205 | 91.71% | 8.29% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 93 | 19.35% | 80.65% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611856511 | C->T | INTERGENIC | None |