Detailed information of SNP:
|
SNP ID:
sf0611856608(Gbrowse)
Chromosome: chr06 Position: 11856608 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 83.83% | 16.17% |
| All Indica | 784 | 71.94% | 28.06% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 68.96% | 31.04% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 207 | 62.32% | 37.68% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611856608 | G->A | INTERGENIC | None |