Detailed information of SNP:
|
SNP ID:
sf0611862009(Gbrowse)
Chromosome: chr06 Position: 11862009 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 81.37% | 18.63% |
| All Indica | 797 | 68.38% | 31.62% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 64.44% | 35.56% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 210 | 58.57% | 41.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611862009 | T->C | INTERGENIC | None |