Detailed information of SNP:
|
SNP ID:
sf0611881369(Gbrowse)
Chromosome: chr06 Position: 11881369 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 70.78% | 29.22% |
| All Indica | 798 | 61.78% | 38.22% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 374 | 58.29% | 41.71% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611881369 | A->G | INTERGENIC | None |