Detailed information of SNP:
|
SNP ID:
sf0611881743(Gbrowse)
Chromosome: chr06 Position: 11881743 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 70.59% | 29.41% |
| All Indica | 798 | 61.53% | 38.47% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 57.87% | 42.13% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 210 | 49.05% | 50.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611881743 | T->C | INTERGENIC | None |