Detailed information of SNP:
|
SNP ID:
sf0611887140(Gbrowse)
Chromosome: chr06 Position: 11887140 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 75.35% | 24.65% |
| All Indica | 796 | 65.83% | 34.17% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 372 | 62.10% | 37.90% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611887140 | C->G | LOC_Os06g20630(LOC_Os06g20630.1) | Synonymous |