Detailed information of SNP:
|
SNP ID:
sf0611902940(Gbrowse)
Chromosome: chr06 Position: 11902940 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 86.98% | 13.02% |
| All Indica | 763 | 76.93% | 23.07% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 75.64% | 24.36% |
| Indica II | 210 | 90.00% | 10.00% |
| Indica Intermediate | 200 | 65.50% | 34.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611902940 | G->A | LOC_Os06g20660(LOC_Os06g20660.1) | Non-Synonymous SNP |