Detailed information of SNP:
|
SNP ID:
sf0611905756(Gbrowse)
Chromosome: chr06 Position: 11905756 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 82.32% | 17.68% |
| All Indica | 794 | 69.27% | 30.73% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 65.95% | 34.05% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 208 | 58.65% | 41.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611905756 | T->A | LOC_Os06g20660(LOC_Os06g20660.1) | Non-Synonymous SNP |