Detailed information of SNP:
|
SNP ID:
sf0611909664(Gbrowse)
Chromosome: chr06 Position: 11909664 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 68.64% | 31.36% |
| All Indica | 799 | 56.45% | 43.55% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 60.00% | 40.00% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 211 | 41.23% | 58.77% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611909664 | T->C | LOC_Os06g20670(LOC_Os06g20670.1) | Non-Synonymous SNP |