Detailed information of SNP:
|
SNP ID:
sf0611925590(Gbrowse)
Chromosome: chr06 Position: 11925590 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 68.53% | 31.47% |
| All Indica | 797 | 56.34% | 43.66% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 374 | 60.16% | 39.84% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 210 | 40.95% | 59.05% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611925590 | A->G | LOC_Os06g20710(LOC_Os06g20710.1) | Synonymous |