Detailed information of SNP:
|
SNP ID:
sf0611942789(Gbrowse)
Chromosome: chr06 Position: 11942789 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 62.86% | 37.14% |
| All Indica | 794 | 95.97% | 4.03% |
| All Japonica | 495 | 6.46% | 93.54% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 371 | 95.69% | 4.31% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 4 | 75.00% | 25.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611942789 | C->T | LOC_Os06g20730(LOC_Os06g20730.1) | Non-Synonymous SNP |