Detailed information of SNP:
|
SNP ID:
sf0611943139(Gbrowse)
Chromosome: chr06 Position: 11943139 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 77.31% | 22.69% |
| All Indica | 799 | 68.46% | 31.54% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 64.80% | 35.20% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 58.29% | 41.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611943139 | G->A | LOC_Os06g20730(LOC_Os06g20730.1) | Non-Synonymous SNP |