Detailed information of SNP:
|
SNP ID:
sf0611945118(Gbrowse)
Chromosome: chr06 Position: 11945118 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 73.34% | 26.66% |
| All Indica | 798 | 64.04% | 35.96% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 60.27% | 39.73% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611945118 | A->G | INTERGENIC | None |