Detailed information of SNP:
|
SNP ID:
sf0611949803(Gbrowse)
Chromosome: chr06 Position: 11949803 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 81.66% | 18.34% |
| All Indica | 720 | 66.94% | 33.06% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 329 | 66.87% | 33.13% |
| Indica II | 190 | 56.84% | 43.16% |
| Indica Intermediate | 201 | 76.62% | 23.38% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611949803 | C->T | INTERGENIC | None |