Detailed information of SNP:
|
SNP ID:
sf0611952874(Gbrowse)
Chromosome: chr06 Position: 11952874 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1401 | 72.45% | 27.55% |
| All Indica | 782 | 51.92% | 48.08% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 362 | 54.42% | 45.58% |
| Indica II | 212 | 49.06% | 50.94% |
| Indica Intermediate | 208 | 50.48% | 49.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611952874 | T->C | LOC_Os06g20750(LOC_Os06g20750.1) | Synonymous |