Detailed information of SNP:
|
SNP ID:
sf0611959921(Gbrowse)
Chromosome: chr06 Position: 11959921 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 74.57% | 25.43% |
| All Indica | 785 | 63.69% | 36.31% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 12.12% | 87.88% |
| Indica I | 367 | 58.04% | 41.96% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 207 | 55.56% | 44.44% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611959921 | G->T | INTERGENIC | None |