Detailed information of SNP:
|
SNP ID:
sf0611959937(Gbrowse)
Chromosome: chr06 Position: 11959937 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 73.51% | 26.49% |
| All Indica | 789 | 62.36% | 37.64% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 372 | 56.99% | 43.01% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 204 | 53.43% | 46.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611959937 | G->A | INTERGENIC | None |