Detailed information of SNP:
|
SNP ID:
sf0611961314(Gbrowse)
Chromosome: chr06 Position: 11961314 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 68.34% | 31.66% |
| All Indica | 796 | 55.90% | 44.10% |
| All Japonica | 497 | 97.99% | 2.01% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 373 | 51.74% | 48.26% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611961314 | A->G | INTERGENIC | None |