Detailed information of SNP:
|
SNP ID:
sf0611968596(Gbrowse)
Chromosome: chr06 Position: 11968596 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 58.21% | 41.79% |
| All Indica | 799 | 32.54% | 67.46% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 35.47% | 64.53% |
| Indica II | 213 | 17.84% | 82.16% |
| Indica Intermediate | 211 | 42.18% | 57.82% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611968596 | T->C | LOC_Os06g20760(LOC_Os06g20760.1) | INTRON |