Detailed information of SNP:
|
SNP ID:
sf0611969044(Gbrowse)
Chromosome: chr06 Position: 11969044 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 62.89% | 37.11% |
| All Indica | 785 | 38.85% | 61.15% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 366 | 43.72% | 56.28% |
| Indica II | 210 | 19.52% | 80.48% |
| Indica Intermediate | 209 | 49.76% | 50.24% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611969044 | G->T | INTERGENIC | None |