Detailed information of SNP:
|
SNP ID:
sf0611986653(Gbrowse)
Chromosome: chr06 Position: 11986653 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 57.12% | 42.88% |
| All Indica | 799 | 85.73% | 14.27% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611986653 | C->T | LOC_Os06g20790(LOC_Os06g20790.1) | INTRON |