Detailed information of SNP:
|
SNP ID:
sf0611988327(Gbrowse)
Chromosome: chr06 Position: 11988327 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.77% | 26.23% |
| All Indica | 798 | 64.79% | 35.21% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 60.80% | 39.20% |
| Indica II | 212 | 83.49% | 16.51% |
| Indica Intermediate | 211 | 53.08% | 46.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611988327 | G->A | LOC_Os06g20790(LOC_Os06g20790.1) | INTRON |