Detailed information of SNP:
|
SNP ID:
sf0611998589(Gbrowse)
Chromosome: chr06 Position: 11998589 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 75.18% | 24.82% |
| All Indica | 799 | 65.21% | 34.79% |
| All Japonica | 480 | 98.75% | 1.25% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 53.55% | 46.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 80 | 97.50% | 2.50% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0611998589 | T->C | INTERGENIC | None |