Detailed information of SNP:
|
SNP ID:
sf0612014352(Gbrowse)
Chromosome: chr06 Position: 12014352 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 65.80% | 34.20% |
| All Indica | 795 | 41.76% | 58.24% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 45.01% | 54.99% |
| Indica II | 213 | 22.07% | 77.93% |
| Indica Intermediate | 211 | 55.92% | 44.08% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612014352 | G->T | LOC_Os06g20820(LOC_Os06g20820.1) | INTRON |