Detailed information of SNP:
|
SNP ID:
sf0612015262(Gbrowse)
Chromosome: chr06 Position: 12015262 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 72.62% | 27.38% |
| All Indica | 798 | 63.41% | 36.59% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 60.53% | 39.47% |
| Indica II | 213 | 80.75% | 19.25% |
| Indica Intermediate | 210 | 50.95% | 49.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612015262 | T->A | INTERGENIC | None |