Detailed information of SNP:
|
SNP ID:
sf0612015548(Gbrowse)
Chromosome: chr06 Position: 12015548 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 76.03% | 23.97% |
| All Indica | 797 | 67.25% | 32.75% |
| All Japonica | 494 | 97.77% | 2.23% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 62.93% | 37.07% |
| Indica II | 212 | 85.38% | 14.62% |
| Indica Intermediate | 210 | 56.67% | 43.33% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612015548 | T->C | INTERGENIC | None |