Detailed information of SNP:
|
SNP ID:
sf0612015578(Gbrowse)
Chromosome: chr06 Position: 12015578 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 62.55% | 37.45% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 497 | 7.04% | 92.96% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612015578 | C->T | INTERGENIC | None |