Detailed information of SNP:
|
SNP ID:
sf0612015810(Gbrowse)
Chromosome: chr06 Position: 12015810 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 64.34% | 35.66% |
| All Indica | 799 | 41.30% | 58.70% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 44.53% | 55.47% |
| Indica II | 213 | 21.60% | 78.40% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612015810 | C->T | INTERGENIC | None |