Detailed information of SNP:
|
SNP ID:
sf0612016411(Gbrowse)
Chromosome: chr06 Position: 12016411 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 71.78% | 28.22% |
| All Indica | 794 | 61.34% | 38.66% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 372 | 56.72% | 43.28% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 209 | 46.89% | 53.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612016411 | C->T | INTERGENIC | None |