Detailed information of SNP:
|
SNP ID:
sf0612021466(Gbrowse)
Chromosome: chr06 Position: 12021466 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 56.93% | 43.07% |
| All Indica | 795 | 85.53% | 14.47% |
| All Japonica | 496 | 5.85% | 94.15% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 212 | 71.70% | 28.30% |
| Indica Intermediate | 209 | 84.69% | 15.31% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0612021466 | T->C | INTERGENIC | None |